PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000785820
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family MYB
Protein Properties Length: 257aa    MW: 28161.9 Da    PI: 5.7094
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000785820genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding52.21.5e-161462148
                     TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48
                     +g+W++eEd  l+++ +++G+g +W + + + g++R++k+c++rw++yl
    MDP0000785820 14 KGPWSPEEDTTLKNYLHKHGTGgNWIALPTKAGLNRCGKSCRLRWLNYL 62
                     79*********************************************97 PP

2Myb_DNA-binding33.97.3e-1168111146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      rg +T+ Ed  +  ++   G++ W+ Ia+ ++ gRt++++k++w++
    MDP0000785820  68 RGGFTEGEDNVICTLHGTIGSR-WSIIASQLP-GRTDNDIKNYWNT 111
                      7889******************.*********.***********97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.756962IPR017930Myb domain
SuperFamilySSF466893.72E-2711109IPR009057Homeodomain-like
SMARTSM007177.2E-121364IPR001005SANT/Myb domain
PfamPF002497.4E-161462IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.1E-231569IPR009057Homeodomain-like
CDDcd001673.17E-91662No hitNo description
PROSITE profilePS5129420.91763117IPR017930Myb domain
SMARTSM007174.0E-1067115IPR001005SANT/Myb domain
PfamPF002491.2E-968111IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.5E-2370117IPR009057Homeodomain-like
CDDcd001671.94E-771113No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 257 aa     Download sequence    Send to blast
MGRAPCCDKS RVKKGPWSPE EDTTLKNYLH KHGTGGNWIA LPTKAGLNRC GKSCRLRWLN  60
YLRPDIKRGG FTEGEDNVIC TLHGTIGSRW SIIASQLPGR TDNDIKNYWN TKLKKKLLAT  120
NNMNLATRDT VDTNLSQFSD SIPKTETLHD QGAPSCFDGT LPYLXDVSSG QSFDPCTQIS  180
PSNPMEVNGF ETREGKSFSI ISPSQEVSSL PTSSGLGLEN NYSIWSGNEG VDNVSGVLMD  240
YGFEXPNDDL LDGFGY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A6e-26141177108B-MYB
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008337621.10.0PREDICTED: transcription factor RAX1-like
RefseqXP_008352348.10.0PREDICTED: transcription factor RAX1-like
TrEMBLM5VX131e-127M5VX13_PRUPE; Uncharacterized protein
STRINGPOPTR_0006s25060.19e-78(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13034340
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49690.15e-64myb domain protein 84